PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g17430.1
Common NameLR48_Vigan01g309200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 312aa    MW: 34755.9 Da    PI: 4.881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g17430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-184896355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Vang11g17430.1 48 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 96
                    56******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3247110IPR001471AP2/ERF domain
CDDcd000187.94E-2847103No hitNo description
PROSITE profilePS5103220.54747104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2848104IPR001471AP2/ERF domain
PRINTSPR003671.1E-74859IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2048105IPR016177DNA-binding domain
PfamPF008472.5E-115096IPR001471AP2/ERF domain
PRINTSPR003671.1E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSTSRTSDTP FKGYDPNQTQ MCLSLLQRNT SPSGERRGRR KQAEPGRFLG VRRRPWGRYA  60
AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGNQAR TNFVYSDNIN FHTILSPADV  120
QVQLQPNNQN SLPKVVHTSN TGNPSPLNND AFVEIETTYG SADQDDSFFF SSDSNSGYLE  180
CIVPDNCFRP ASSRTNSSNS RKSNVSDQKA NTNSSESTNH HEQYYYSQEM AVMSQGSWDD  240
QQSWDWNCSE LSAIFKNPLR VENGCMDALY PMSDDQSPSP SYGVMNECAS STTCSPSLPP  300
FGDVDLGYPL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1848103359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508449.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A0L9TSR30.0A0A0L9TSR3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9220.0A0A0S3R922_PHAAN; Uncharacterized protein
STRINGGLYMA07G37990.21e-163(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-52ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]